2024

  • Kaur, H., Shannon, L.M. & Samac, D.A. A stepwise guide for pangenome development in crop plants: an alfalfa (Medicago sativa) case study. BMC Genomics 25, 1022 (2024).https://doi.org/10.1186/s12864-024-10931-w

  • Yusuf, M., Miller, M. D., Stefaniak, T. R., Haagenson, D., Endelman, J. B., Thompson, A. L., & Shannon, L. M. (2024). Genomic prediction for potato (Solanum tuberosum) quality traits improved through image analysis. The Plant Genome, e20507.https://doi.org/10.1002/tpg2.20507

  • Tuttle, H.K., Del Rio A.H., Bamberg J.B., & Shannon L.M. (2024). Potato Soup: Analysis of Cultivated Potato Gene Bank Populations Reveals High Diversity and Little Structure. Frontiers in Plant Science.https://doi.org/10.3389/fpls.2024.1429279

  • Endelman, J.B., Kante, M., Lindqvist-Kreuze, H., Kilian, A., Shannon, L.M., Caraza-Harter, M.V., Vaillancourt, B., Mailloux, K., Hamilton, J.P., & Buell, C.R. (2024). Targeted genotyping-by-sequencing of potato and data analysis with R/polyBreedR. The Plant Genome, e20484. https://doi.org/10.1002/tpg2.20484

  • Agha, H.I., Endelman, J.B., Chitwood-Brown, J. et al. Genotype-by-environment interactions and local adaptation shape selection in the US National Chip Processing Trial. Theor Appl Genet 137, 99 (2024).https://doi.org/10.1007/s00122-024-04610-3

  • Feldman, M. J., Park, J., Miller, N., Wakholi, C., Greene, K., Abbasi, A., Rippner, D. A., Navarre, D., Schmitz Carley, C., Shannon, L. M., & Novy, R. (2024). A scalable, low-cost phenotyping strategy to assess tuber size, shape, and the colorimetric features of tuber skin and flesh in potato breeding populations. The Plant Phenome Journal, 7, e20099. https://doi.org/10.1002/ppj2.20099

2023

  • Agha, H. I., Shannon, L. M., & Morrell, P. L. Unloading potatoes: Potato breeding moves forward with only half the genome. Cell Genomics, (2023). https://doi.org/10.1016/j.xgen.2023.100343

  • Agha, H.I., Schroeder, L., Eikholt, D., Schmitz Carley, C.A., Cavendar-Bares, J., and Shannon, L.M. Assessing the Effectiveness of Reflectance Spectroscopy Analysis to Determine Ploidy in Potato. Am. J. Potato res. (2023). https://doi.org/10.1007/s12230-022-09899-8

2022

  • Stefaniak, T.R., Miller, J., Jones, C.R., Miller, M., Yusuf, M., Harder, M.A., Larsen, J.C., Schmitz Carley, C.A., Haagenson, D., Thompson, A., Michaels, T.E., Thill, C., and Shannon, L.M. Polaris Gold: An Attractive, Yellow-fleshed Tablestock Cultivar with Chipping Potential. Am. J. Potato Res. (2022). https://doi.org/10.1007/s12230-022-09896-x

  • Miller, M.D., Schmitz Carley, C.A., Figueroa, R.A., Feldman, M.J., Haagenson, D., and Shannon, L.M. TubAR: an R Package for Quantifying Tuber Shape and Skin Traits from Images. Am. J. Potato Res. (2022). https://doi.org/10.1007/s12230-022-09894-z

  • Meng, X., Tuttle, H., Shannon, L.M. (2022). Potato Population Genomics. In: Population Genomics. Springer, Cham. https://doi.org/10.1007/13836_2022_103

  • Hoopes, G., Meng, X., … Tuttle, H.K., … Shannon, L.M., … Buell, C.R., and Finkers, R. Phased, chromosome-scale genome assemblies of tetraploid potato reveal a complex genome, transcriptome, and predicted proteome landscape underpinning genetic diversity. Molecular Plant. (2022). https://doi.org/10.1016/j.molp.2022.01.003

2021

  • Busse, J.S., Jansky, S.H., Agha, H.I. et al. A High Throughput Method for Generating Dihaploids from Tetraploid Potato. Am. J. Potato Res. (2021). https://doi.org/10.1007/s12230-021-09844-1

  • Stefaniak, T.R.; Fitzcollins, S.; Figueroa, R.; Thompson, A.L.; Schmitz Carley, C.; Shannon, L.M. Genotype and Variable Nitrogen Effects on Tuber Yield and Quality for Red Fresh Market Potatoes in Minnesota. Agronomy 2021, 11, 255. https://doi.org/10.3390/agronomy11020255

2020

  • Jones, C.R., Michaels, T.E., Carley, C.S., Rosen, C.J. and Shannon, L.M. (2021), Nitrogen uptake and utilization in advanced fresh market red potato breeding lines. Crop Sci.. Accepted Author Manuscript. https://doi.org/10.1002/csc2.20297